#sample	replicate	left.reads	right.reads

heatshock	hs_rep1	rnaseq_reads/Sp_hs.10k.left.fq.gz	rnaseq_reads/Sp_hs.10k.right.fq.gz

plateau	plat_rep1	rnaseq_reads/Sp_plat.10k.right.fq.gz	rnaseq_reads/Sp_plat.10k.left.fq.gz

log_growth	log_rep1	rnaseq_reads/Sp_log.10k.left.fq.gz	rnaseq_reads/Sp_log.10k.right.fq.gz

diauxic_shift	ds_rep1	rnaseq_reads/Sp_ds.10k.right.fq.gz	rnaseq_reads/Sp_ds.10k.left.fq.gz


## Trinity.pl configuration settings:
--CPU=4
--JM=1G
--seqType=fq
--SS_lib_type=RF

## analyze_diff_expr.pl settings
-P=0.1
-C=1
