See: Description
Class | Description |
---|---|
DrawingWindow |
A class responsible for displaying a drawing window.
|
DynalignFoldWindow |
A class responsible for initializing and running the Dynalign module, which
calculates common structures for two strands of nucleic acids.
|
DynalignRefoldWindow |
A class responsible for initializing and running the Dynalign refold
module, which refolds a previous Dynalign calculation from a save file.
|
Efn2Window |
A class responsible for initializing and running the efn2 (Energy Function
2) module, which calculates the folding free energy of structures.
|
FoldDoubleWindow |
A class responsible for initializing and running the bifold module, which
folds two strands of nucleic acids into their likely hybrid structure.
|
FoldSingleWindow |
A class responsible for initializing and running the Fold module, which
folds a strand of nucleic acids into their likely lowest free energy
structure.
|
FoldSuboptimalWindow |
A class responsible for initializing and running the AllSub module, which
calculates the free energy of a varied group of suboptimal structures.
|
InternalWindow |
A class that holds internal frames for the RNAstructure GUI.
|
MaxExpectWindow |
A class responsible for initializing and running the MaxExpect module,
which generates a group of structures containing pairs with the maximum
probability of being accurate.
|
ModuleWindow |
A class responsible for creating and displaying a window that enables a
user to input data for one of the RNAstructure modules.
|
MultilignWindow |
A class responsible for initializing and running the Multilign module,
which calculates common secondary structures of multiple sequences using
multiple iterations of Dynalign.
|
MultiWindow |
A class responsible for creating and displaying an input window that takes
multiple arbitrary sequences and CT files as input.
|
OligoScreenWindow |
A class responsible for initializing and running the OligoScreen module,
which calculates thermodynamic properties for a list of oligonucleotides.
|
OligoWalkWindow |
A class that handles creation of windows for the OligoWalk module.
|
PartitionDoubleWindow |
A class responsible for initializing and running the bipartition module,
which calculates the partition function for two strands of nucleic acids.
|
PartitionSingleWindow |
A class responsible for initializing and running the partition module, which
calculates the partition function for a single strand of nucleic acids.
|
ProbKnotWindow |
A class responsible for initializing and running the ProbKnot module, which
predicts pseudoknots in a strand of nucleic acids.
|
PseudoknotWindow |
A class responsible for initializing and running the RemovePseudoknots
module, which removes pseudoknots from a nucleic acid sequence.
|
RefoldWindow |
A class responsible for initializing and running the refold module, which
refolds a previous folding calculation from a save file.
|
SequenceDisplayWindow |
A class responsible for displaying a window that allows a user to examine
raw sequence data.
|
StochasticWindow |
A class responsible for initializing and running the stochastic module,
which generates a stochastic sample of structures.
|
TurboFoldWindow |
A class responsible for initializing and running the TurboFold module,
which calculates common secondary structures of multiple sequences using
the partition function and probabalistic alignments.
|