<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<?xml-stylesheet type="text/xsl" href="fimo-to-html.xsl"?>
<!-- Begin document body -->
<fimo version="4.10.0" release="Wed May 21 10:35:36 2014 +1000">
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation=  xmlns:fimo="http://noble.gs.washington.edu/schema/fimo"
>
<command-line>/home/james/reldist/BUILD/bin/fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_4 --bgfile memechip_example_output_files/background --motif MA0036.1 JASPAR_CORE_2009.meme memechip_example_output_files/sample-dna-Klf1.fa</command-line>
<settings>
<setting name="output directory">memechip_example_output_files/fimo_out_4</setting>
<setting name="MEME file name">JASPAR_CORE_2009.meme</setting>
<setting name="sequence file name">memechip_example_output_files/sample-dna-Klf1.fa</setting>
<setting name="background file name">memechip_example_output_files/background</setting>
<setting name="allow clobber">true</setting>
<setting name="compute q-values">true</setting>
<setting name="parse genomic coord.">true</setting>
<setting name="text only">false</setting>
<setting name="scan both strands">true</setting>
<setting name="max sequence length">250000000</setting>
<setting name="output threshold">0.0001</setting>
<setting name="threshold type">p-value</setting>
<setting name="max stored scores">100000</setting>
<setting name="pseudocount">0.1</setting>
<setting name="verbosity">1</setting>
<setting name="selected motif">MA0036.1</setting>
</settings>
<sequence-data num-sequences="904" num-residues="452000" />
<alphabet>nucleotide</alphabet>
<motif name="MA0001.1" width="10" best-possible-match="CCATAAATAG"/>
<motif name="MA0002.1" width="11" best-possible-match="TATTGTGGTTA"/>
<motif name="MA0002.2" width="11" best-possible-match="GTCTGTGGTTT"/>
<motif name="MA0003.1" width="9" best-possible-match="GCCCGGGGG"/>
<motif name="MA0004.1" width="6" best-possible-match="CACGTG"/>
<motif name="MA0005.1" width="11" best-possible-match="CCAAATTTGGT"/>
<motif name="MA0006.1" width="6" best-possible-match="TGCGTG"/>
<motif name="MA0007.1" width="22" best-possible-match="ATAAGAACATCGTGTACCCGCC"/>
<motif name="MA0008.1" width="8" best-possible-match="CAATTATT"/>
<motif name="MA0009.1" width="11" best-possible-match="CTAGGTGTGAA"/>
<motif name="MA0010.1" width="14" best-possible-match="GTAATAAACAAATC"/>
<motif name="MA0011.1" width="8" best-possible-match="TACTATTT"/>
<motif name="MA0012.1" width="11" best-possible-match="TAAACTAAAAG"/>
<motif name="MA0013.1" width="11" best-possible-match="TAGTAAACAAA"/>
<motif name="MA0014.1" width="20" best-possible-match="AGAGCACTGAAGCGTAACGG"/>
<motif name="MA0015.1" width="10" best-possible-match="GTATATATAC"/>
<motif name="MA0016.1" width="10" best-possible-match="GGGGTCACGG"/>
<motif name="MA0017.1" width="14" best-possible-match="TGACCTTTGAACCT"/>
<motif name="MA0018.1" width="12" best-possible-match="CCTGGTGACGTC"/>
<motif name="MA0018.2" width="8" best-possible-match="TGACGTCA"/>
<motif name="MA0019.1" width="12" best-possible-match="AGATGCAATCCC"/>
<motif name="MA0020.1" width="6" best-possible-match="AAAGCA"/>
<motif name="MA0021.1" width="6" best-possible-match="AAAGCG"/>
<motif name="MA0022.1" width="12" best-possible-match="GGGGTTTTTCCG"/>
<motif name="MA0023.1" width="10" best-possible-match="GGGGTTTTCC"/>
<motif name="MA0024.1" width="8" best-possible-match="TTTGGCGC"/>
<motif name="MA0025.1" width="11" best-possible-match="TTATGTAACAT"/>
<motif name="MA0026.1" width="7" best-possible-match="CCGGAAG"/>
<motif name="MA0027.1" width="11" best-possible-match="AAGTAGTGTTC"/>
<motif name="MA0028.1" width="10" best-possible-match="GAGCCGGAAG"/>
<motif name="MA0029.1" width="14" best-possible-match="AAGATAAGATAATA"/>
<motif name="MA0030.1" width="14" best-possible-match="CAAACGTAAACAAT"/>
<motif name="MA0031.1" width="8" best-possible-match="GTAAACAT"/>
<motif name="MA0032.1" width="8" best-possible-match="GGTAAGTA"/>
<motif name="MA0033.1" width="8" best-possible-match="TATACATA"/>
<motif name="MA0034.1" width="10" best-possible-match="GACAACCGCC"/>
<motif name="MA0035.1" width="6" best-possible-match="GGATGG"/>
<motif name="MA0035.2" width="11" best-possible-match="ACAGATAAGAA"/>
<motif name="MA0036.1" width="5" best-possible-match="GGATA"/>
<motif name="MA0037.1" width="6" best-possible-match="AGATAG"/>
<motif name="MA0038.1" width="10" best-possible-match="CAAATCACTG"/>
<motif name="MA0039.1" width="10" best-possible-match="TAAAGGAAGG"/>
<motif name="MA0039.2" width="10" best-possible-match="TGGGTGGGGC"/>
<motif name="MA0040.1" width="11" best-possible-match="TATTGTTTATT"/>
<motif name="MA0041.1" width="12" best-possible-match="GAATGTTTGTTT"/>
<motif name="MA0042.1" width="12" best-possible-match="GGATGTTTGTTT"/>
<motif name="MA0043.1" width="12" best-possible-match="GGTTACGTAATT"/>
<motif name="MA0044.1" width="9" best-possible-match="GTTGTATTC"/>
<motif name="MA00445.1" width="11" best-possible-match="TCCATTGTTCT"/>
<motif name="MA0045.1" width="16" best-possible-match="CAACAAATGGAAAAAC"/>
<motif name="MA0046.1" width="14" best-possible-match="GGTTAATAATTAAC"/>
<motif name="MA0047.1" width="12" best-possible-match="CAATATTTACTT"/>
<motif name="MA0047.2" width="12" best-possible-match="TGTTTACTTAGG"/>
<motif name="MA0048.1" width="12" best-possible-match="GCGCAGCTGCGT"/>
<motif name="MA0049.1" width="10" best-possible-match="GCATAAAAAA"/>
<motif name="MA0050.1" width="12" best-possible-match="GAAAGTGAAACC"/>
<motif name="MA0051.1" width="18" best-possible-match="GGAAAGTGAAAGCAAAAC"/>
<motif name="MA0052.1" width="10" best-possible-match="CTATTTATAG"/>
<motif name="MA0053.1" width="5" best-possible-match="AAAGC"/>
<motif name="MA0054.1" width="9" best-possible-match="TAACCGTTT"/>
<motif name="MA0055.1" width="12" best-possible-match="CAGCAGCTGCTG"/>
<motif name="MA0056.1" width="6" best-possible-match="TGGGGA"/>
<motif name="MA0057.1" width="10" best-possible-match="GTAGGGGGAA"/>
<motif name="MA0058.1" width="10" best-possible-match="AACCACGTGA"/>
<motif name="MA0059.1" width="11" best-possible-match="GAGCACGTGGT"/>
<motif name="MA0060.1" width="16" best-possible-match="CTCAGCCAATCAGCGC"/>
<motif name="MA0061.1" width="10" best-possible-match="GGGAATTTCC"/>
<motif name="MA0062.1" width="10" best-possible-match="ACCGGAAGAG"/>
<motif name="MA0062.2" width="11" best-possible-match="CCGGAAGTGGC"/>
<motif name="MA0063.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0064.1" width="5" best-possible-match="AAAGC"/>
<motif name="MA0065.1" width="20" best-possible-match="TTAGGGGTCAAAGGTCATCT"/>
<motif name="MA0065.2" width="15" best-possible-match="GTAGGGCAAAGGTCA"/>
<motif name="MA0066.1" width="20" best-possible-match="GTAGGTCACGGTGACCTACT"/>
<motif name="MA0067.1" width="8" best-possible-match="AGTCACGG"/>
<motif name="MA0068.1" width="30" best-possible-match="GAAAAATTTCCAATACTCCACTCCCCCCCC"/>
<motif name="MA0069.1" width="14" best-possible-match="TTCACGCATGAGTT"/>
<motif name="MA0070.1" width="12" best-possible-match="CCATCAATCAAA"/>
<motif name="MA0071.1" width="10" best-possible-match="ATCAAGGTCA"/>
<motif name="MA0072.1" width="14" best-possible-match="TATAAGTAGGTCAA"/>
<motif name="MA0073.1" width="20" best-possible-match="CCCCAAACCACCCCCCCCCA"/>
<motif name="MA0074.1" width="15" best-possible-match="GGGTCATCGAGTTCA"/>
<motif name="MA0075.1" width="5" best-possible-match="AATTA"/>
<motif name="MA0076.1" width="9" best-possible-match="ACCGGAAGT"/>
<motif name="MA0077.1" width="9" best-possible-match="GAACAATGG"/>
<motif name="MA0078.1" width="9" best-possible-match="TTCATTGTC"/>
<motif name="MA0079.1" width="10" best-possible-match="GGGGCGGGGT"/>
<motif name="MA0079.2" width="10" best-possible-match="CCCCGCCCCC"/>
<motif name="MA0080.1" width="6" best-possible-match="CGGAAG"/>
<motif name="MA0080.2" width="7" best-possible-match="AGGAAGT"/>
<motif name="MA0081.1" width="7" best-possible-match="AGAGGAA"/>
<motif name="MA0082.1" width="14" best-possible-match="CCAAAAATGGAAAT"/>
<motif name="MA0083.1" width="12" best-possible-match="GCCCATATATGG"/>
<motif name="MA0084.1" width="9" best-possible-match="GTAAACAAT"/>
<motif name="MA0085.1" width="16" best-possible-match="TTGTGGGAAACGAGAT"/>
<motif name="MA0086.1" width="6" best-possible-match="CAGGTG"/>
<motif name="MA0087.1" width="7" best-possible-match="TAACAAT"/>
<motif name="MA0088.1" width="20" best-possible-match="GATTTCCCATAATGCCTTGC"/>
<motif name="MA0089.1" width="6" best-possible-match="CATGAC"/>
<motif name="MA0090.1" width="12" best-possible-match="CACATTCCTCCG"/>
<motif name="MA0091.1" width="12" best-possible-match="CGACCATCTGTT"/>
<motif name="MA0092.1" width="10" best-possible-match="GGTCTGGCAT"/>
<motif name="MA0093.1" width="7" best-possible-match="CACGTGG"/>
<motif name="MA0094.1" width="4" best-possible-match="TAAT"/>
<motif name="MA0094.2" width="8" best-possible-match="TTTAATTA"/>
<motif name="MA0095.1" width="6" best-possible-match="GCCATC"/>
<motif name="MA0096.1" width="7" best-possible-match="ATGACGT"/>
<motif name="MA0097.1" width="12" best-possible-match="GATGACGTGGCC"/>
<motif name="MA0098.1" width="6" best-possible-match="TTTCCG"/>
<motif name="MA0099.1" width="8" best-possible-match="GTGAGTCA"/>
<motif name="MA0099.2" width="7" best-possible-match="TGACTCA"/>
<motif name="MA0100.1" width="8" best-possible-match="GGCCGTTG"/>
<motif name="MA0101.1" width="10" best-possible-match="GGGGATTTCC"/>
<motif name="MA0102.1" width="12" best-possible-match="TTTCGCAATCTT"/>
<motif name="MA0102.2" width="9" best-possible-match="TTTCGCAAT"/>
<motif name="MA0103.1" width="6" best-possible-match="CACCTG"/>
<motif name="MA0104.1" width="6" best-possible-match="CACGTG"/>
<motif name="MA0104.2" width="10" best-possible-match="CGCACGTGGC"/>
<motif name="MA0105.1" width="11" best-possible-match="GGGGATTCCCC"/>
<motif name="MA0106.1" width="20" best-possible-match="CCGGACATGCCCGGGCATGT"/>
<motif name="MA0107.1" width="10" best-possible-match="GGGAATTTCC"/>
<motif name="MA0108.1" width="15" best-possible-match="GTATAAAAGGCGGGG"/>
<motif name="MA0108.2" width="15" best-possible-match="GTATAAAAGGCGGGG"/>
<motif name="MA0109.1" width="10" best-possible-match="AACCTTATAT"/>
<motif name="MA0110.1" width="9" best-possible-match="CCAATTATT"/>
<motif name="MA0111.1" width="11" best-possible-match="AGGGTAACAGC"/>
<motif name="MA0112.1" width="18" best-possible-match="CCAGGTCACCGTGACCCC"/>
<motif name="MA0112.2" width="20" best-possible-match="GGCCCAGGTCACCCTGACCT"/>
<motif name="MA0113.1" width="18" best-possible-match="GGGAACATTATGTCCTAT"/>
<motif name="MA0114.1" width="13" best-possible-match="AGGCCAAAGGTCA"/>
<motif name="MA0115.1" width="17" best-possible-match="AAAGGTCAAAGGTCAAC"/>
<motif name="MA0116.1" width="15" best-possible-match="GGCACCCAGGGGTGC"/>
<motif name="MA0117.1" width="8" best-possible-match="GCTGACGG"/>
<motif name="MA0118.1" width="9" best-possible-match="TGGGGGTTC"/>
<motif name="MA0119.1" width="14" best-possible-match="TGGCACCATGCCAA"/>
<motif name="MA0120.1" width="12" best-possible-match="TTTTCCTTTTCG"/>
<motif name="MA0121.1" width="8" best-possible-match="AGATCCGC"/>
<motif name="MA0122.1" width="9" best-possible-match="TTAAGTGGA"/>
<motif name="MA0123.1" width="10" best-possible-match="CGGTGCCCCC"/>
<motif name="MA0124.1" width="7" best-possible-match="ATACTTA"/>
<motif name="MA0125.1" width="8" best-possible-match="TAATTGGT"/>
<motif name="MA0126.1" width="9" best-possible-match="AGTAACAGT"/>
<motif name="MA0127.1" width="10" best-possible-match="ACTTCTTATT"/>
<motif name="MA0128.1" width="8" best-possible-match="ACACGTGG"/>
<motif name="MA0129.1" width="7" best-possible-match="TACGTCA"/>
<motif name="MA0130.1" width="6" best-possible-match="ATCCAC"/>
<motif name="MA0131.1" width="10" best-possible-match="TAACGTCCGC"/>
<motif name="MA0132.1" width="6" best-possible-match="CTAATT"/>
<motif name="MA0133.1" width="7" best-possible-match="ACAACAC"/>
<motif name="MA0135.1" width="13" best-possible-match="AAATTAATTAATC"/>
<motif name="MA0136.1" width="9" best-possible-match="TACTTCCTT"/>
<motif name="MA0137.1" width="14" best-possible-match="GGAAAATGAAACTG"/>
<motif name="MA0137.2" width="15" best-possible-match="CATTTCCCGGAAACC"/>
<motif name="MA0138.1" width="19" best-possible-match="GCGCTGTCCATGGTGCTGA"/>
<motif name="MA0138.2" width="21" best-possible-match="TTCAGCACCATGGACAGCGCC"/>
<motif name="MA0139.1" width="19" best-possible-match="TGGCCACCAGGGGGCGCTA"/>
<motif name="MA0140.1" width="18" best-possible-match="CTGGTGGGGACAGATAAG"/>
<motif name="MA0141.1" width="12" best-possible-match="AGCTCAAGGTCA"/>
<motif name="MA0142.1" width="15" best-possible-match="CTTTGTTATGCAAAT"/>
<motif name="MA0143.1" width="15" best-possible-match="CCTTTGTTATGCAAA"/>
<motif name="MA0144.1" width="10" best-possible-match="TTCCAGGAAG"/>
<motif name="MA0145.1" width="14" best-possible-match="CCAGTTCAAACCAG"/>
<motif name="MA0146.1" width="14" best-possible-match="GGGGCCGAGGCCTG"/>
<motif name="MA0147.1" width="10" best-possible-match="CGCACGTGGC"/>
<motif name="MA0148.1" width="11" best-possible-match="TGTTTACTTTG"/>
<motif name="MA0149.1" width="18" best-possible-match="GGAAGGAAGGAAGGAAGG"/>
<motif name="MA0150.1" width="11" best-possible-match="ATGACTCAGCA"/>
<motif name="MA0151.1" width="6" best-possible-match="ATTAAA"/>
<motif name="MA0152.1" width="7" best-possible-match="TTTTCCA"/>
<motif name="MA0153.1" width="12" best-possible-match="TTAATATTTAAC"/>
<motif name="MA0154.1" width="10" best-possible-match="ACCCAAGGGA"/>
<motif name="MA0155.1" width="12" best-possible-match="TGTCAGGGGGCG"/>
<motif name="MA0156.1" width="8" best-possible-match="CAGGAAAT"/>
<motif name="MA0157.1" width="8" best-possible-match="TGTAAACA"/>
<motif name="MA0158.1" width="8" best-possible-match="CACTAATT"/>
<motif name="MA0159.1" width="17" best-possible-match="AGGTCATGGAGAGGTCA"/>
<motif name="MA0160.1" width="8" best-possible-match="AAGGTCAC"/>
<motif name="MA0161.1" width="6" best-possible-match="TTGGCA"/>
<motif name="MA0162.1" width="11" best-possible-match="TGCGTGGGCGT"/>
<motif name="MA0163.1" width="14" best-possible-match="GGGGCCCAAGGGGG"/>
<motif name="MA0164.1" width="7" best-possible-match="CAAGCTT"/>
<motif name="MA0165.1" width="7" best-possible-match="TTTATGA"/>
<motif name="MA0166.1" width="7" best-possible-match="TTAATGA"/>
<motif name="MA0167.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0168.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0169.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0170.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0171.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0172.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0173.1" width="7" best-possible-match="TTAACAT"/>
<motif name="MA0174.1" width="7" best-possible-match="TTTATTA"/>
<motif name="MA0175.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0176.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0177.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0178.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0179.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0180.1" width="9" best-possible-match="TTTAATTAG"/>
<motif name="MA0181.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0182.1" width="7" best-possible-match="TTTATTA"/>
<motif name="MA0183.1" width="8" best-possible-match="TTTAATTA"/>
<motif name="MA0184.1" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0185.1" width="6" best-possible-match="TTCGTG"/>
<motif name="MA0186.1" width="7" best-possible-match="TTAATGA"/>
<motif name="MA0187.1" width="7" best-possible-match="TAATTAC"/>
<motif name="MA0188.1" width="7" best-possible-match="CCAATTA"/>
<motif name="MA0189.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0190.1" width="6" best-possible-match="TAATCC"/>
<motif name="MA0191.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0192.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0193.1" width="7" best-possible-match="CTACCAA"/>
<motif name="MA0194.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0195.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0196.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0197.1" width="8" best-possible-match="TTTAATTA"/>
<motif name="MA0198.1" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0199.1" width="5" best-possible-match="TGATA"/>
<motif name="MA0200.1" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0201.1" width="7" best-possible-match="TTAATCC"/>
<motif name="MA0202.1" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0203.1" width="7" best-possible-match="TTAATGA"/>
<motif name="MA0204.1" width="6" best-possible-match="TGATAC"/>
<motif name="MA0205.1" width="10" best-possible-match="TTGCTCTCTC"/>
<motif name="MA0206.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0207.1" width="6" best-possible-match="TGACAG"/>
<motif name="MA0208.1" width="7" best-possible-match="TAATTAA"/>
<motif name="MA0209.1" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0210.1" width="5" best-possible-match="TAACA"/>
<motif name="MA0211.1" width="7" best-possible-match="TTAAGTG"/>
<motif name="MA0212.1" width="6" best-possible-match="TAATCC"/>
<motif name="MA0213.1" width="8" best-possible-match="CTGGCGCC"/>
<motif name="MA0214.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0215.1" width="7" best-possible-match="TTAATGA"/>
<motif name="MA0216.1" width="7" best-possible-match="TTTATTG"/>
<motif name="MA0217.1" width="5" best-possible-match="TAACA"/>
<motif name="MA0218.1" width="6" best-possible-match="TTGAAC"/>
<motif name="MA0219.1" width="7" best-possible-match="TTAATGA"/>
<motif name="MA0220.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0221.1" width="7" best-possible-match="CTAATGA"/>
<motif name="MA0222.1" width="8" best-possible-match="TTTTGACA"/>
<motif name="MA0223.1" width="7" best-possible-match="GTAATTA"/>
<motif name="MA0224.1" width="7" best-possible-match="GTAATTA"/>
<motif name="MA0225.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0226.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0227.1" width="6" best-possible-match="TGACAG"/>
<motif name="MA0228.1" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0229.1" width="8" best-possible-match="TCTAATTA"/>
<motif name="MA0230.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0231.1" width="6" best-possible-match="TAACTA"/>
<motif name="MA0232.1" width="6" best-possible-match="TAATTA"/>
<motif name="MA0233.1" width="5" best-possible-match="AAACA"/>
<motif name="MA0234.1" width="6" best-possible-match="TAATCC"/>
<motif name="MA0235.1" width="7" best-possible-match="TTGATTT"/>
<motif name="MA0236.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0237.1" width="8" best-possible-match="CTTTGATC"/>
<motif name="MA0238.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0239.1" width="9" best-possible-match="AGTAACAGT"/>
<motif name="MA0240.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0241.1" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0242.1" width="9" best-possible-match="TAACCGCAA"/>
<motif name="MA0243.1" width="12" best-possible-match="GACATTCCTCGA"/>
<motif name="MA0244.1" width="8" best-possible-match="ATTGCAAA"/>
<motif name="MA0245.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0246.1" width="6" best-possible-match="TGATAC"/>
<motif name="MA0247.1" width="8" best-possible-match="CTCAAGTG"/>
<motif name="MA0248.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0249.1" width="12" best-possible-match="TCGCATATGTTG"/>
<motif name="MA0250.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0251.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0252.1" width="6" best-possible-match="TGACAG"/>
<motif name="MA0253.1" width="9" best-possible-match="TTTCAAGTG"/>
<motif name="MA0254.1" width="6" best-possible-match="TATGCA"/>
<motif name="MA0255.1" width="10" best-possible-match="TTGAGTGATT"/>
<motif name="MA0256.1" width="7" best-possible-match="CTAATGA"/>
<motif name="MA0257.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0258.1" width="18" best-possible-match="CAAGGTCACGGTGACCTG"/>
<motif name="MA0259.1" width="8" best-possible-match="GGACGTGC"/>
<motif name="MA0260.1" width="6" best-possible-match="GAAACC"/>
<motif name="MA0261.1" width="6" best-possible-match="GAACAC"/>
<motif name="MA0262.1" width="13" best-possible-match="AATGTTGCGAATT"/>
<motif name="MA0263.1" width="14" best-possible-match="ATTGGCTTCGTTAA"/>
<motif name="MA0264.1" width="11" best-possible-match="ACCACTTGAAA"/>
<motif name="MA0265.1" width="16" best-possible-match="TCGTATAAAGTGATAT"/>
<motif name="MA0266.1" width="7" best-possible-match="CTCTAGA"/>
<motif name="MA0267.1" width="7" best-possible-match="ACCAGCA"/>
<motif name="MA0268.1" width="7" best-possible-match="ACCCCAC"/>
<motif name="MA0269.1" width="21" best-possible-match="TTACATATTGCACCCGATTGG"/>
<motif name="MA0270.1" width="8" best-possible-match="CACACCCC"/>
<motif name="MA0271.1" width="6" best-possible-match="AGACGC"/>
<motif name="MA0272.1" width="8" best-possible-match="GTGACTCT"/>
<motif name="MA0273.1" width="21" best-possible-match="GATAATTCTCGGCAAGTATGT"/>
<motif name="MA0274.1" width="8" best-possible-match="ACTTGAAT"/>
<motif name="MA0275.1" width="6" best-possible-match="CCGGAA"/>
<motif name="MA0276.1" width="10" best-possible-match="CCGGATCGGG"/>
<motif name="MA0277.1" width="9" best-possible-match="AAAAAGAAA"/>
<motif name="MA0278.1" width="21" best-possible-match="GCACAGCCAGAGTCAAGTCAA"/>
<motif name="MA0279.1" width="10" best-possible-match="ATTAGTAAGC"/>
<motif name="MA0280.1" width="6" best-possible-match="CCGGAA"/>
<motif name="MA0281.1" width="8" best-possible-match="GCACGTGA"/>
<motif name="MA0282.1" width="8" best-possible-match="CTCGGAAA"/>
<motif name="MA0283.1" width="8" best-possible-match="GGCGGAGA"/>
<motif name="MA0284.1" width="10" best-possible-match="TTACGTAATC"/>
<motif name="MA0285.1" width="9" best-possible-match="CTAAGCCAC"/>
<motif name="MA0286.1" width="9" best-possible-match="ATGACGTAA"/>
<motif name="MA0287.1" width="11" best-possible-match="CAGCAAAAATG"/>
<motif name="MA0288.1" width="9" best-possible-match="TGACACATT"/>
<motif name="MA0289.1" width="7" best-possible-match="CGATAAG"/>
<motif name="MA0290.1" width="19" best-possible-match="AAAAGCCGCGGGCGGGATT"/>
<motif name="MA0291.1" width="9" best-possible-match="AATGTGCGC"/>
<motif name="MA0292.1" width="7" best-possible-match="CTCCGGA"/>
<motif name="MA0293.1" width="11" best-possible-match="AAAGATCTAAA"/>
<motif name="MA0294.1" width="9" best-possible-match="CGGAAAAAT"/>
<motif name="MA0295.1" width="8" best-possible-match="GACGCAAA"/>
<motif name="MA0296.1" width="20" best-possible-match="TGAATTGTAAACAAAGAGGA"/>
<motif name="MA0297.1" width="7" best-possible-match="GTAAACA"/>
<motif name="MA0298.1" width="6" best-possible-match="CTATCA"/>
<motif name="MA0299.1" width="15" best-possible-match="CGGGGAACAGTACTC"/>
<motif name="MA0300.1" width="8" best-possible-match="CCGATAAG"/>
<motif name="MA0301.1" width="9" best-possible-match="AGATCTACA"/>
<motif name="MA0302.1" width="11" best-possible-match="AAAGATCTAAA"/>
<motif name="MA0303.1" width="21" best-possible-match="CAAGGGATGAGTCATACTTCA"/>
<motif name="MA0304.1" width="8" best-possible-match="TGGAAGCC"/>
<motif name="MA0305.1" width="7" best-possible-match="GCTTCCT"/>
<motif name="MA0306.1" width="9" best-possible-match="ACCCCTAAA"/>
<motif name="MA0307.1" width="5" best-possible-match="GATAA"/>
<motif name="MA0308.1" width="21" best-possible-match="ATTAAAAAACTCCGGAGTATA"/>
<motif name="MA0309.1" width="8" best-possible-match="TGATAAGA"/>
<motif name="MA0310.1" width="8" best-possible-match="GACACGTG"/>
<motif name="MA0311.1" width="5" best-possible-match="CGGAA"/>
<motif name="MA0312.1" width="8" best-possible-match="CGGAGATA"/>
<motif name="MA0313.1" width="5" best-possible-match="TTGGT"/>
<motif name="MA0314.1" width="15" best-possible-match="TCTGATTGGTTCAGA"/>
<motif name="MA0315.1" width="15" best-possible-match="ACCAATCAGAGGCGA"/>
<motif name="MA0316.1" width="15" best-possible-match="TGGGATCTGATTGGT"/>
<motif name="MA0317.1" width="8" best-possible-match="ATAAACAA"/>
<motif name="MA0318.1" width="8" best-possible-match="CATGTAAT"/>
<motif name="MA0319.1" width="8" best-possible-match="ATGGAACA"/>
<motif name="MA0320.1" width="8" best-possible-match="CCGCCGAG"/>
<motif name="MA0321.1" width="9" best-possible-match="GCATGTGAA"/>
<motif name="MA0322.1" width="9" best-possible-match="GCATGTGAA"/>
<motif name="MA0323.1" width="15" best-possible-match="AAGCCGGAAGCGGGG"/>
<motif name="MA0324.1" width="10" best-possible-match="CCGTTACCGG"/>
<motif name="MA0325.1" width="8" best-possible-match="CCGGAATT"/>
<motif name="MA0326.1" width="8" best-possible-match="TTTGCTCA"/>
<motif name="MA0327.1" width="7" best-possible-match="ACACAAT"/>
<motif name="MA0328.1" width="9" best-possible-match="CATGTAATT"/>
<motif name="MA0329.1" width="7" best-possible-match="ACGCGTA"/>
<motif name="MA0330.1" width="7" best-possible-match="ACGCGTT"/>
<motif name="MA0331.1" width="12" best-possible-match="CCCAATTAGGAA"/>
<motif name="MA0332.1" width="6" best-possible-match="CTGTGG"/>
<motif name="MA0333.1" width="9" best-possible-match="AGTGTGGCG"/>
<motif name="MA0334.1" width="7" best-possible-match="CGCCACA"/>
<motif name="MA0335.1" width="8" best-possible-match="AACTGTGG"/>
<motif name="MA0336.1" width="21" best-possible-match="AGGACTATAGAACACTCTAAA"/>
<motif name="MA0337.1" width="7" best-possible-match="CCCCCGC"/>
<motif name="MA0338.1" width="7" best-possible-match="CCCCGCA"/>
<motif name="MA0339.1" width="7" best-possible-match="CCCCGCA"/>
<motif name="MA0340.1" width="6" best-possible-match="TAGGTA"/>
<motif name="MA0341.1" width="5" best-possible-match="AGGGG"/>
<motif name="MA0342.1" width="5" best-possible-match="AGGGG"/>
<motif name="MA0343.1" width="21" best-possible-match="TTTCCGGCCACAAAAACGCAA"/>
<motif name="MA0344.1" width="8" best-possible-match="GCCGGGGA"/>
<motif name="MA0345.1" width="21" best-possible-match="ATGACCTATATATAAAAATGA"/>
<motif name="MA0346.1" width="20" best-possible-match="TTTATTTATATATAATATGA"/>
<motif name="MA0347.1" width="20" best-possible-match="CTAGATCAGGGTCCATCGCA"/>
<motif name="MA0348.1" width="9" best-possible-match="TCGGAGATA"/>
<motif name="MA0349.1" width="7" best-possible-match="CGAACCG"/>
<motif name="MA0350.1" width="21" best-possible-match="AGGCACAGCTCATCGCGTTTT"/>
<motif name="MA0351.1" width="21" best-possible-match="TTCTGCACCTCATCGCATCCT"/>
<motif name="MA0352.1" width="8" best-possible-match="TCCGCGGA"/>
<motif name="MA0353.1" width="8" best-possible-match="TCCGCGGA"/>
<motif name="MA0354.1" width="8" best-possible-match="ACGGAGAT"/>
<motif name="MA0355.1" width="10" best-possible-match="ACCTGCAGCA"/>
<motif name="MA0356.1" width="6" best-possible-match="ATAATA"/>
<motif name="MA0357.1" width="8" best-possible-match="GCACGTGC"/>
<motif name="MA0358.1" width="8" best-possible-match="CCCGGGAA"/>
<motif name="MA0359.1" width="10" best-possible-match="CACCCATACA"/>
<motif name="MA0360.1" width="8" best-possible-match="TGCGGAAC"/>
<motif name="MA0361.1" width="7" best-possible-match="CGGCCGA"/>
<motif name="MA0362.1" width="7" best-possible-match="CTCGGGG"/>
<motif name="MA0363.1" width="9" best-possible-match="GTTACCCGG"/>
<motif name="MA0364.1" width="7" best-possible-match="CCCCTGA"/>
<motif name="MA0365.1" width="8" best-possible-match="GGTTGCTA"/>
<motif name="MA0366.1" width="5" best-possible-match="AGGGG"/>
<motif name="MA0367.1" width="11" best-possible-match="AATTTTTCCGG"/>
<motif name="MA0368.1" width="7" best-possible-match="CGCCAAG"/>
<motif name="MA0369.1" width="18" best-possible-match="AGTTCTATAAATAGATTC"/>
<motif name="MA0370.1" width="10" best-possible-match="TCCAAAGGAA"/>
<motif name="MA0371.1" width="12" best-possible-match="TCCATTGTTCTC"/>
<motif name="MA0372.1" width="8" best-possible-match="ACCCCTAA"/>
<motif name="MA0373.1" width="7" best-possible-match="GGTGGCG"/>
<motif name="MA0374.1" width="7" best-possible-match="CGCGCGG"/>
<motif name="MA0375.1" width="8" best-possible-match="CGCGCGCG"/>
<motif name="MA0376.1" width="20" best-possible-match="ATATTAGCACGTGCTTAGTC"/>
<motif name="MA0377.1" width="21" best-possible-match="TAGAGAATAGAAGAAATAAAA"/>
<motif name="MA0378.1" width="21" best-possible-match="ATTGAAAAAAATTTTCTACGG"/>
<motif name="MA0379.1" width="5" best-possible-match="ATATA"/>
<motif name="MA0380.1" width="7" best-possible-match="CTCCGGA"/>
<motif name="MA0381.1" width="6" best-possible-match="GGCCAT"/>
<motif name="MA0382.1" width="8" best-possible-match="ACGTAATG"/>
<motif name="MA0383.1" width="21" best-possible-match="TTACCTATAATTAAATTAGCA"/>
<motif name="MA0384.1" width="11" best-possible-match="TGGTAGCGCCG"/>
<motif name="MA0385.1" width="11" best-possible-match="ACCTGCAGGCA"/>
<motif name="MA0386.1" width="21" best-possible-match="GACTAGATATATATATTCGAT"/>
<motif name="MA0387.1" width="10" best-possible-match="AATTAAAGAA"/>
<motif name="MA0388.1" width="8" best-possible-match="GAAATCAA"/>
<motif name="MA0389.1" width="8" best-possible-match="AGATCTAC"/>
<motif name="MA0390.1" width="21" best-possible-match="GTCCAAAATTTTTCACTCTGG"/>
<motif name="MA0391.1" width="7" best-possible-match="CTCGGAA"/>
<motif name="MA0392.1" width="8" best-possible-match="CGGTGTTA"/>
<motif name="MA0393.1" width="7" best-possible-match="TGAAACA"/>
<motif name="MA0394.1" width="8" best-possible-match="TGCGGCGC"/>
<motif name="MA0395.1" width="20" best-possible-match="TGATCGGCGCCGCACGACGA"/>
<motif name="MA0396.1" width="9" best-possible-match="GCTAGCGCA"/>
<motif name="MA0397.1" width="9" best-possible-match="GATAGCGCA"/>
<motif name="MA0398.1" width="9" best-possible-match="AAAATTTTT"/>
<motif name="MA0399.1" width="7" best-possible-match="CGCGGGG"/>
<motif name="MA0400.1" width="20" best-possible-match="ATGATAAACTCCGAAAATTT"/>
<motif name="MA0401.1" width="8" best-possible-match="ACGCGAAA"/>
<motif name="MA0402.1" width="8" best-possible-match="TGCTGGTT"/>
<motif name="MA0403.1" width="8" best-possible-match="AACCCTAA"/>
<motif name="MA0404.1" width="8" best-possible-match="CGGATCCG"/>
<motif name="MA0405.1" width="8" best-possible-match="GCGGACAT"/>
<motif name="MA0406.1" width="8" best-possible-match="ACATTCCC"/>
<motif name="MA0407.1" width="15" best-possible-match="GGAAACTCTAAGAAC"/>
<motif name="MA0408.1" width="8" best-possible-match="CTGTCAAA"/>
<motif name="MA0409.1" width="7" best-possible-match="CACGTGA"/>
<motif name="MA0410.1" width="8" best-possible-match="CGGCGGGA"/>
<motif name="MA0411.1" width="7" best-possible-match="TATACGA"/>
<motif name="MA0412.1" width="13" best-possible-match="TCGGCGGCTAATT"/>
<motif name="MA0413.1" width="20" best-possible-match="AAATTCCCCCTGAATTTGTG"/>
<motif name="MA0414.1" width="7" best-possible-match="CTCGAGA"/>
<motif name="MA0415.1" width="20" best-possible-match="ATTTGCTTACGTAAGCTCGT"/>
<motif name="MA0416.1" width="8" best-possible-match="ATTACGTA"/>
<motif name="MA0417.1" width="6" best-possible-match="AAGCAT"/>
<motif name="MA0418.1" width="20" best-possible-match="GGTCTGATTACGTAAGCGAC"/>
<motif name="MA0419.1" width="11" best-possible-match="ATTAGTAAGCA"/>
<motif name="MA0420.1" width="8" best-possible-match="ACCGGAAC"/>
<motif name="MA0421.1" width="10" best-possible-match="TTTACCCGGC"/>
<motif name="MA0422.1" width="10" best-possible-match="CCGGAGATAA"/>
<motif name="MA0423.1" width="9" best-possible-match="ACCCCTATT"/>
<motif name="MA0424.1" width="8" best-possible-match="CTCCGGAA"/>
<motif name="MA0425.1" width="14" best-possible-match="ACCCCACTTTTTTA"/>
<motif name="MA0426.1" width="6" best-possible-match="TAATTG"/>
<motif name="MA0427.1" width="11" best-possible-match="AGCTCCGGAGA"/>
<motif name="MA0428.1" width="9" best-possible-match="AACGGAAAT"/>
<motif name="MA0429.1" width="7" best-possible-match="CGGCCGA"/>
<motif name="MA0430.1" width="8" best-possible-match="CCGGAGTT"/>
<motif name="MA0431.1" width="9" best-possible-match="ACCCCGCAC"/>
<motif name="MA0432.1" width="8" best-possible-match="TCGGAGAT"/>
<motif name="MA0433.1" width="8" best-possible-match="TTAATTAA"/>
<motif name="MA0434.1" width="9" best-possible-match="TGTAGATCA"/>
<motif name="MA0435.1" width="20" best-possible-match="TGAAGACGTAAATCCTTACA"/>
<motif name="MA0436.1" width="7" best-possible-match="CCCCACG"/>
<motif name="MA0437.1" width="9" best-possible-match="ATTTCTCCG"/>
<motif name="MA0438.1" width="8" best-possible-match="ACGGAAAT"/>
<motif name="MA0439.1" width="11" best-possible-match="CTTATCTCCGC"/>
<motif name="MA0440.1" width="15" best-possible-match="ACCTTAAAGGTCATG"/>
<motif name="MA0441.1" width="9" best-possible-match="TTCCCCGCA"/>
<motif name="MA0442.1" width="6" best-possible-match="CTTTGT"/>
<motif name="MA0443.1" width="10" best-possible-match="AGGGGGCGGA"/>
<motif name="MA0444.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0446.1" width="11" best-possible-match="TGTTTGCTTAA"/>
<motif name="MA0447.1" width="10" best-possible-match="ATTACGTAAT"/>
<motif name="MA0448.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0449.1" width="10" best-possible-match="GGCACGTGCC"/>
<motif name="MA0450.1" width="9" best-possible-match="GGGGCGTGA"/>
<motif name="MA0451.1" width="12" best-possible-match="AAACTAGAGCAC"/>
<motif name="MA0452.1" width="11" best-possible-match="CAAAAGGGTTA"/>
<motif name="MA0453.1" width="12" best-possible-match="TATGCAAATTAG"/>
<motif name="MA0454.1" width="11" best-possible-match="AACAGTAGCAG"/>
<motif name="MA0455.1" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0456.1" width="12" best-possible-match="GACCCCCCGCTG"/>
<motif name="MA0457.1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0458.1" width="11" best-possible-match="TTGTTTACATT"/>
<motif name="MA0459.1" width="10" best-possible-match="AAAAGTCAAA"/>
<motif name="MA0460.1" width="9" best-possible-match="AAGGATAAT"/>
<background source="memechip_example_output_files/background">
<value letter="A">0.256</value>
<value letter="C">0.244</value>
<value letter="G">0.244</value>
<value letter="T">0.256</value>
</background>
<cisml-file>cisml.xml</cisml-file>
</fimo>
