The name of the motif uses the IUPAC codes for nucleotides which has a different letter to represent each of the 15 possible combinations.

The name is itself a representation of the motif though the position weight matrix is not directly equalivant as it is generated from the sites found that matched the letters given in the name.

Read more about the MEME suite's use of the IUPAC alphabets.

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The logo of the motif.

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The logo of the reverse complement motif.

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The E-value is the enrichment p-value times the number of candidate motifs tested.

The enrichment p-value is calculated using Fisher's Exact Test for enrichment of the motif in the positive sequences.

Note that the counts used in Fisher's Exact Test are made after erasing sites that match previously found motifs.

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The E-value of the motif calculated without erasing the sites of previously found motifs.

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Show more information on the motif.

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Submit your motif to another MEME Suite program.

##### Supported Programs

Tomtom
  Tomtom is a tool for searching for similar known motifs. [manual]
MAST
  MAST is a tool for searching biological sequence databases for sequences that contain one or more of a group of known motifs. [manual]
FIMO
  FIMO is a tool for searching biological sequence databases for sequences that contain one or more known motifs. [manual]
GOMO
  GOMO is a tool for identifying possible roles (Gene Ontology terms) for DNA binding motifs. [manual]
SpaMo
  SpaMo is a tool for inferring possible transcription factor complexes by finding motifs with enriched spacings. [manual]

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Download your motif as a position weight matrix or a custom logo.

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# positive sequences matching the motif / # positive sequences.

Note these counts are made after erasing sites that match previously found motifs.

[close ]

# negative sequences matching the motif / # negative sequences.

Note these counts are made after erasing sites that match previously found motifs.

[close ]

The p-value of Fisher's Exact Test for enrichment of the motif in the positive sequences.

Note that the counts used in Fisher's Exact Test are made after erasing sites that match previously found motifs.

[close ]

The E-value is the motif p-value times the number of candidate motifs tested.

Note that the p-value was calculated with counts made after erasing sites that match previously found motifs.

[close ]

The E-value of the motif calculated without erasing the sites of previously found motifs.

[close ]

All words matching the motif whose uncorrected p-value is less than 0.01.

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# positive sequences with matches to the word / # positive sequences.

Note these counts are made after erasing sites that match previously found motifs.

[close ]

# negative sequences with matches to the word / # negative sequences.

Note these counts are made after erasing sites that match previously found motifs.

[close ]

The p-value of Fisher's Exact Test for enrichment of the word in the positive sequences.

Note that the counts used in Fisher's Exact Test are made after erasing sites that match previously found motifs.

[close ]

The word p-value times the number of candidates tested.

Note that the p-value was calculated with counts made after erasing sites that match previously found motifs.

[close ]

## .

↥
Submit
⇢
Download
⟱

#### Details

Positives | Negatives | P-value | E-value | Unerased E-value
--- | --- | --- | --- | ---
/812 | /812 |  |  |

#### Enriched Matching Words

Word | Positives | Negatives | P-value | ▼E-value
--- | --- | --- | --- | ---
| /812 | /812 |  |

## Submit ""

## Submit All Motifs

x
⇧
⇩

#### Select what you want to do

- Search Motifs
- Search Sequences
- Rank Sequences
- Predict Gene Ontology terms
- Infer TF Complexes

#### Select a program

- Tomtom
- FIMO
- MAST
- GOMO
- SpaMo

Or

#### Search Motifs with Tomtom

Find similar motifs in published libraries or a library you supply.

## Download ""

x
⇧
⇩
PSPM Format PSSM Format Logo

Format: |
Orientation: |
Small Sample Correction: |
Width: | cm
Height: | cm

# DREME

## Discriminative Regular Expression Motif Elicitation

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use DREME in your research please cite the following paper:
Timothy L. Bailey, "DREME: Motif discovery in transcription factor ChIP-seq data", Bioinformatics, 27(12):1653-1659, 2011. [full text]

Discovered motifs | Program information

## Discovered Motifs | Next Top

Click on the ↧ under the More column to show more information about the motif.
Click on the ⇢ under the Submit column to send the motif to another MEME suite program. Eg. Tomtom
Click on the ⟱ under the Download column to get the position weight matrix of a motif or to download the logo image with your chosen options.

| Motif | Logo | RC Logo | E-value | Unerased E-value | More | Submit | Download
1. | GGGYGK |  |  | 7.4e-058 | 7.4e-058 | ↧ | ⇢ | ⟱
2. | TTATCW |  |  | 6.5e-034 | 6.5e-034 | ↧ | ⇢ | ⟱
3. | AGAWA |  |  | 8.1e-003 | 2.9e-014 | ↧ | ⇢ | ⟱

Submit All
⇢
Previous Top

##### DREME version

4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000)

##### Reference

Timothy L. Bailey, "DREME: Motif discovery in transcription factor ChIP-seq data", Bioinformatics, 27(12):1653-1659, 2011.

##### Command line summary

dreme -v 1 -oc memechip_example_output_files/dreme_out -p memechip_example_output_files/seqs-centered -n memechip_example_output_files/seqs-shuffled -png
Result calculation took 17.02 seconds
show model parameters...

##### Model parameters

positives = name: "seqs-centered", count: "812", file: "memechip_example_output_files/seqs-centered", last_mod_date: "Tue Oct 07 17:09:05 EST 2014" negatives = name: "seqs-shuffled", count: "812", from: "file", file: "memechip_example_output_files/seqs-shuffled", last_mod_date: "Tue Oct 07 17:09:06 EST 2014" background = type: "dna", A: "0.246", C: "0.254", G: "0.250", T: "0.251", from: "dataset" stop = evalue: "0.05" norc = FALSE ngen = 100 add_pv_thresh = 0.01 seed = 1 host = IMB12-010665 when = Tue Oct 07 17:17:31 EST 2014
hide model parameters...