<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!-- Begin document body -->
<mcast version="4.10.0" release="Wed May 21 10:35:36 2014 +1000">
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation=  xmlns:mhmmscan="http://noble.gs.washington.edu/schema/fimo"
>
<command-line>mcast -oc mcast_example_output_files crp0.meme.html crp0.s</command-line>
<sequence-data num-sequences="18" num-residues="1890" />
<alphabet>nucleotide</alphabet>
<motif name="1" width="18" best-possible-match="AATTGTGACGTTGTTCAC" best-possible-rc-match="GTGATCTACGTCACAATT"/>
<motif name="2" width="8" best-possible-match="CGGTGGGG" best-possible-rc-match="CCCCGCCG"/>
<motif name="3" width="11" best-possible-match="CCTGGTGTGCC" best-possible-rc-match="GGGACCCCAGG"/>
<background source="non-redundant database">
<value letter="A">0.282</value>
<value letter="C">0.222</value>
<value letter="G">0.229</value>
<value letter="T">0.267</value>
</background>
<cisml-file>cisml.xml</cisml-file>
<mcast-parmaeters>
<min-match-score>2.907</min-match-score>
<e-thresh>10.000</e-thresh>
<p-thresh>1.000</p-thresh>
<q-thresh>1.000</q-thresh>
<max-gap>50</max-gap>
<cost-factor>1</cost-factor>
<gap-open-cost>0.0581</gap-open-cost>
<gap-extend-cost>0.0581</gap-extend-cost>
</mcast-parmaeters>
<e-value-parmaeters>
<distribution>exponential</distribution>
<status>To few scores to estimate fit</status>
<mu1>NaN</mu1>
<mu2>NaN</mu2>
<sigma2>NaN</sigma2>
<c>NaN</c>
<num-scores-used>0</num-scores-used>
<num-matches>17</num-matches>
<db-length>1890</db-length>
</e-value-parmaeters>
</mcast>
