hub cannabisTandemClustersMultiz
shortLabel cs10 synthase arrays, 217-way
longLabel cs10 TPS and cannabinoid-synthase arrays with the WF-I 217-way multiz (live hub)
useOneFile on
email richard.burhans@gmail.com
descriptionUrl hubDescription.html

genome cs10_NCBI_RefSeq_softmasked
twoBitPath https://depot.galaxyproject.org/highgen/cs10_NCBI_RefSeq_softmasked/cs10_NCBI_RefSeq_softmasked.2bit
defaultPos NC_044378.1:30965000-31000000
htmlPath hubDescription.html
organism Cannabis sativa
description cs10 (GCF_900626175.2), as in the cannabis assembly hub

track familyGenes
shortLabel TPS/BBE genes
longLabel TPS (green) and oxidocyclase/BBE-like (purple) protein-coding genes, abbreviated RefSeq product; LQ = LOW QUALITY model
type bigBed 9
itemRgb on
visibility pack
bigDataUrl familyGenes.6f960d5f83.bb

track grassaS9
shortLabel Grassa S9 synthases
longLabel Grassa 2021 Table S9: THCAS mRNA (AB057805) BLAST hits >82% on CBDRx chr7 = cs10 chr7; % identity, bp aligned, LTR (LTR01 orange, LTR08 blue)
type bigBed 9
itemRgb on
visibility pack
bigDataUrl grassaS9.5a6b4df319.bb

track refseqGenes
shortLabel RefSeq genes
longLabel cs10 RefSeq gene models, as in the cannabis assembly hub
type bigBed 12
visibility pack
bigDataUrl https://depot.galaxyproject.org/highgen/cs10_NCBI_RefSeq_softmasked/bbi/cs10_NCBI_RefSeq_softmasked.anno.bb

track multiz217way
bigDataUrl https://depot.galaxyproject.org/highgen/cs10_NCBI_RefSeq_softmasked/bbi/multiz217way.bigMaf.bb
frames https://depot.galaxyproject.org/highgen/cs10_NCBI_RefSeq_softmasked/bbi/multiz217way.frames.bb
speciesCodonDefault cs10_NCBI_RefSeq_softmasked
summary https://depot.galaxyproject.org/highgen/cs10_NCBI_RefSeq_softmasked/bbi/multiz217way.summary.bb
shortLabel 217-way multiz
longLabel 217-way multiz: cs10 and 216 Cannabis sativa assemblies (WF-I)
speciesOrder ASM209043v1 ASM5191171v1 ASM5191173v1 ASM1303036v1 CNBv1a CNBv1b cannabis_hap2_GWHISUP00000000_1 CSLZ_hapA_GWHGZJI00000000_1 CSLZ_hapB_GWHGZJJ00000000_1 ITLv1a ITLv1b ASM341772v2 H3S1b GERv1a GERv1b H3S7b FCS1b SN1v3b SN1v3a SAN2b SAN2a SGVA KOMPa KCDv1a KCDv1b BCMa WIv1a WIv1b BCMb FIMv1a FIMv1b WFv1a WFv1b TURv1b TURv1a BLCv1a BLCv1b KOMPb TIBv1a TIBv1b cannabis_hap1_GWHISUO00000000_1 YMv2a YMv2b YMMv1a YMMv1b CANU_GWHCAYE00000000 BOAXa FL02_coge60295 FL49_coge60294 FL18_coge60292 FL48_coge60293 T2T_GCA_054642775_1_IMPD T2T_GCA_054642815_1_IMPD FMv1a FMv1b ANC_1 ASM5191178v1 ANC_2 ASM5191176v1 BOAXb H3S1a TWFBa TRWR TWSVa AH3Mb GRMa Cherry_Pie Punto_Rojo MM3v1a MM3v1b ABC PTK32 ASM2916894v1 ASM23057v5 H3S7a MBSVa MBFBa MNDB Csat_AbacusV2 ASM5191164v1 UFBa URKL OFBa OFP5 ASM5191170v1 LP10 LP6 FCS1a GSC SDFBa SUNDR SKTZ SZFBa ASM151000v1 CHM9 WC WCFBa TK10 BBKH BLYS TK7 TKFBa PURD FOG GMO CHMD5 CHMD3 SDI W19LR W103 WLR WH96 WH72 WH106 WH94 SODLb PPFBa PURP ACBD SSA1 SVA6b SSA2 SVA12b PPFBb COFBa TKFBb WCFBb SKFBb MBFBb SCFB DPFBb TWFBb SDFBb FBHO UFBb OFBb FB191 SZFBb EH23a S8H2LR BH55 S8Hb SHH5b HO40 STHb SHH24 MBSVb DPSVb SSV SVA6a WHLR COSVb SSH SSHS SV2 USV SVA12a TWSVb WCSV Chemdog91_175268 AH3Ma SK88 SKFBa CST53 CST8 STHa STLR TS13 TST192 TST58 DPSVa DRBP DPFBa SKSV WHWa Cannbio_2 GRMb S8LR S8Ha SUV8 SSLR SHLR SH50 SHH5a ASM186575v1 ACDC DCHCC NLv1b SMSQ WHWb 79X NLv1a BH4 FB30 BH44 I75 I53 I52 I78 I59 I68 I3 I61 SG123 P20 P22 EH23b ERB SODLa COFBb CALO COSVa JL_Father JL5 JL_DASH JL_Mother
speciesDefaultOff ASM209043v1 ASM5191171v1 ASM5191173v1 ASM1303036v1 CNBv1a CNBv1b cannabis_hap2_GWHISUP00000000_1 CSLZ_hapA_GWHGZJI00000000_1 CSLZ_hapB_GWHGZJJ00000000_1 ITLv1a ITLv1b H3S1b GERv1a GERv1b H3S7b FCS1b SN1v3b SN1v3a SAN2b SAN2a SGVA KOMPa KCDv1a KCDv1b BCMa WIv1a WIv1b BCMb FIMv1a FIMv1b WFv1a WFv1b TURv1b TURv1a BLCv1a BLCv1b KOMPb TIBv1a TIBv1b cannabis_hap1_GWHISUO00000000_1 YMv2a YMv2b YMMv1a YMMv1b CANU_GWHCAYE00000000 BOAXa FL02_coge60295 FL49_coge60294 FL18_coge60292 FL48_coge60293 FMv1a FMv1b ANC_1 ASM5191178v1 ANC_2 ASM5191176v1 BOAXb H3S1a TWFBa TRWR TWSVa AH3Mb GRMa Cherry_Pie Punto_Rojo MM3v1a MM3v1b ABC PTK32 H3S7a MBSVa MBFBa MNDB Csat_AbacusV2 ASM5191164v1 UFBa URKL OFBa OFP5 ASM5191170v1 LP10 LP6 FCS1a GSC SDFBa SUNDR SKTZ SZFBa ASM151000v1 CHM9 WC WCFBa TK10 BBKH BLYS TK7 TKFBa PURD FOG GMO CHMD5 CHMD3 SDI W19LR W103 WLR WH96 WH72 WH106 WH94 SODLb PPFBa PURP ACBD SSA1 SVA6b SSA2 SVA12b PPFBb COFBa TKFBb WCFBb SKFBb MBFBb SCFB DPFBb TWFBb SDFBb FBHO UFBb OFBb FB191 SZFBb S8H2LR BH55 S8Hb SHH5b HO40 STHb SHH24 MBSVb DPSVb SSV SVA6a WHLR COSVb SSH SSHS SV2 USV SVA12a TWSVb WCSV Chemdog91_175268 AH3Ma SK88 SKFBa CST53 CST8 STHa STLR TS13 TST192 TST58 DPSVa DRBP DPFBa SKSV WHWa GRMb S8LR S8Ha SUV8 SSLR SHLR SH50 SHH5a ASM186575v1 ACDC DCHCC NLv1b SMSQ WHWb 79X NLv1a BH4 FB30 BH44 I75 I53 I52 I78 I59 I68 I3 I61 SG123 P20 P22 EH23b ERB SODLa COFBb CALO COSVa JL_Father JL5 JL_DASH JL_Mother
itemFirstCharCase noChange
type bigMaf
visibility full
group compGeno
priority 1